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martes, 28 de junio de 2022

Las vacunas contra el SARS-COV-2 pueden haber salvado alrededor de 20 millones de vidas.

 

Las vacunas contra el SARS-COV-2 pueden haber salvado alrededor de 20 millones de vidas. Como todas las estimaciones, el valor exacto puede variar, pero su enorme impacto sobre la salud pública es indiscutible.

COVID-19 vaccination has substantially altered the course of the pandemic, saving tens of millions of lives globally. However, inadequate access to vaccines in low-income countries has limited the impact in these settings, reinforcing the need for global vaccine equity and coverage.

The first COVID-19 vaccine was delivered outside of a clinical trial setting on Dec 8, 2020. By Dec 8, 2021, 55·9% of the global population was estimated to have received at least one dose of a COVID-19 vaccine, 45·5% estimated to have received two doses, and 4·3% estimated to have received a booster dose. Despite the incredible speed with which COVID-19 vaccines were developed in 2020 and subsequently distributed during 2021, more than 3·5 million deaths due to COVID-19 have been reported globally since the first vaccine was administered.
 
Understanding the global impact of vaccination on the course of the COVID-19 pandemic is challenging given the heterogeneous access to vaccines coupled with different levels of transmission and ongoing non-pharmaceutical interventions across countries. In the early months of 2021, the impact of vaccination would have been minimal because of the delay in developing the infrastructure for a widespread vaccination campaign, the need for a delayed two-dose regimen in some jurisdictions to ensure maximum protection, and the delay in the development of antibodies following vaccination. Additionally, as vaccine supply was constrained, most countries opted to prioritise vaccination in high-risk populations, including health-care workers and older people. Such strategies would have generated direct protection but would have had comparatively less impact on SARS-CoV-2 transmission. However, from mid-2021 onwards those countries with access to plentiful vaccine supply opted for mass vaccination of the adult population, later including children and subsequent boosting to maintain high levels of protection given the waning in vaccine efficacy and the emergence of new variants of concern. This approach has resulted in vast inequalities in global vaccine distribution.

To reduce inequality, a fair allocation mechanism for COVID-19 vaccines was developed through the COVID-19 Vaccines Global Access (COVAX) facility, with a key target of achieving 20% vaccine coverage for the countries covered by its Advance Market Commitment (AMC) through COVAX-secured doses by the end of 2021. WHO expanded this target by setting a global strategy to achieve 70% coverage in all countries by mid-2022, with an interim target of 40% coverage by the end of 2021. However, as a result of numerous challenges, particularly the constrained vaccine supply to COVAX (exacerbated by some countries obtaining a greater proportion of the global vaccine supply, pharmaceutical companies not meeting their contractual obligations to COVAX, and unpredictable delays in supply including vaccines with brief expiry windows), these targets were not reached in many lower-middle-income countries and low-income countries. Vaccine uptake has also been suboptimal in many countries because of vaccine hesitancy. This considerable heterogeneity in vaccination coverage has resulted in continued reliance on non-pharmaceutical interventions for pandemic management in some countries but concomitantly enabled other nations to relax interventions as a route out of the pandemic.
Quantifying the impact of vaccination is further challenged by the incomplete picture of the COVID-19 pandemic that is obtained from reported deaths. In many countries, vital registration systems are incomplete and therefore only a fraction of deaths are routinely reported. However, even in countries with complete vital registration systems, it is difficult to accurately define the cause of death in individuals who present with multiple morbidities. Excess all-cause mortality (the difference between the observed and expected number of deaths in non-pandemic years) has therefore been used to quantify the impact of the COVID-19 pandemic. Although the exact contribution of COVID-19 to excess mortality is unknown, the strong temporal correlation observed globally between reported COVID-19 mortality and excess mortality provides evidence that excess mortality is an informative indicator of pandemic-related mortality. Robust vital registration systems do not exist in many parts of the world, with WHO estimating that 40% of global deaths that occurred in 2020 were unregistered, and therefore data on excess mortality are not available for every country. Model-based estimates have therefore been developed to obtain a more complete estimate of the pandemic to date. One set of estimates produced by The Economist uses a range of socioeconomic and epidemiological data to infer excess mortality. Although the precise estimates differ between research groups and WHO, they all suggest a substantially larger number of COVID-19 deaths than have been reported to date.
We aimed to quantify the global impact of the first year of COVID-19 vaccination and estimate the number of deaths from COVID-19 averted in 185 countries and territories, both from the direct protection of vaccinated individuals and from the indirect protection of all individuals living in vaccinated environments due to the reduction in risk of infection. Additionally, we aimed to quantify the impact that a more equitable global vaccination campaign, meeting the vaccination targets set by COVAX of 20% vaccination coverage of the eligible population by the end of 2021, could have had in COVAX AMC countries. We also aimed to quantify the impact of achieving the WHO target of 40% coverage by the end of 2021 in all countries.

Methods

Transmission model fitting

For this mathematical modelling study, we used a previously published COVID-19 transmission model and fitting framework to obtain profiles of the COVID-19 pandemic in each country and thus estimate the counterfactual scenario in which vaccines are not delivered. Briefly, the model is a population-based, age-structured susceptible-exposed-infectious-recovered-susceptible (SEIRS) model, which explicitly captures disease severity, passage through different indicated health-care levels, and the roll-out of vaccination. We incorporated country-level data on demography, age-based mixing patterns, and health-care capacity. We fit the model to officially reported COVID-19 deaths in each country, resulting in an inferred time-varying level of transmission, Rt, denoting the mean number of secondary infections in the absence of both infection-induced and vaccine-derived immunity. By fitting directly to mortality, we indirectly captured the impact that non-pharmaceutical interventions have had over the course of the COVID-19 pandemic.
Vaccination rates for first and second doses in each country were taken from Our World in Data and the WHO dashboard. We assumed a vaccination strategy that first targets those most at risk (including health-care workers) and then iteratively distributes vaccines in descending age order. Vaccination was assumed to confer protection against SARS-CoV-2 infection and the development of severe disease requiring hospital admission, and to reduce transmission from vaccine breakthrough infections (ie, we assumed vaccinated individuals who develop infection would be less infectious than unvaccinated individuals). We inferred vaccine efficacy for each country on the basis of vaccine types known to be predominantly used in each country. We explicitly modelled the emergence of the delta (B.1.617.2) variant and its impact on vaccine efficacy, hospital admissions, and immune escape. Any epidemiological differences associated with previous variants were assumed to be reflected by their effects on mortality, which were subsequently captured by the estimated Rt trend. We fit the model to COVID-19 mortality in a Bayesian framework using a Metropolis-Hastings Markov Chain Monte Carlo-based sampling scheme. We used the resulting fit to estimate the time-varying reproductive number, Rt, and its associated uncertainty.
Complete details of the model, vaccination, variants, and model fitting are given in the appendix (pp 2–10). No ethical concerns were noted for this study, with all mortality data used based on nationally aggregated statistics; all datasets used were publicly available.

Excess mortality and COVID-19 mortality data

Because of the heterogeneity in death registration and certification worldwide, we also fit the model to all-cause excess mortality. For countries and time periods for which excess mortality had not been reported, we used model-based estimates of all-cause excess mortality, first produced by The Economist. More details of the methodology are given in the appendix (p 2). Given the wide uncertainty in these model-based estimates of excess mortality in many parts of the world, we also presented the deaths averted as estimated by fitting to official reported COVID-19 deaths from the Johns Hopkins University COVID-19 Data Repository (appendix p 2). Importantly, these estimates based on official reported COVID-19 deaths represent the lower bound of deaths averted at the global level due to the considerable levels of under-reporting of COVID-19 mortality documented worldwide.

Estimating deaths averted due to vaccination

The first vaccination outside a clinical trial setting was given on Dec 8, 2020. We introduced vaccination from this point onwards in the model and explored the impact of the first year of vaccination up to Dec 8, 2021. To quantify the impact of vaccination and its associated uncertainty, we took 100 draws from the estimated distribution of Rt and vaccine efficacy estimates for each country and simulated a counterfactual scenario in which no vaccines are available and the epidemic in each country follows the same Rt trend since the start of the pandemic; a counterfactual in which vaccines are delivered but there are no indirect effects (ie, they do not reduce SARS-CoV-2 transmission); and the observed scenario in which vaccines were delivered at the rates reported. The third scenario generated an estimate of the trajectory of the epidemic for our fitted model and hence closely matched reported COVID-19 or excess deaths or estimated excess deaths in each country. We calculated the deaths averted as a result of vaccination by subtracting the estimated COVID-19 deaths from the simulation with vaccines included (the observed scenario) from the estimated COVID-19 deaths under the first counterfactual scenario. This process is illustrated in the appendix (p 18), which shows the estimated deaths averted for the USA. Because of the difficulty in predicting how governments and populations would have responded, and how viral evolution would have progressed if vaccines had not been available, we made no attempt to adjust the Rt trends for further non-pharmaceutical interventions, changes in mobility, or development of variants that probably would have occurred differently in the absence of vaccination. To explore the impact of key model parameters on estimates of deaths averted, we did additional sensitivity analyses. These included characterising the effects of the assumed relationship between the infection fatality ratio (IFR) and age (appendix p 10), as well as the assumed degree of immune evasion exhibited by the delta variant (appendix p 7).
We also explored the impact of increasing vaccine distribution to meet WHO and COVAX targets. We modelled two scenarios in which the targets set by WHO to fully vaccinate 40% of the eligible population in each country and administrative region, and by COVAX to fully vaccinate 20% of the eligible population in AMC countries, by the end of 2021 had been reached. To do so, for countries in which these targets had not been met, we scaled the roll-out of vaccines across the year by a constant factor such that exactly the targeted amount of the population had received their second vaccine dose by our end date (Dec 8, 2021).

Statistical analysis

All analyses were done with R software (version 4.1.3), with all data, code, packages, and versions used available online at GitHub. This analysis covered 185 countries and territories with a population greater than 90 000 as reported in World Population Prospects 2019, and that reported at least one death due to COVID-19 or 1 week of positive estimated excess mortality. We excluded China from our estimates because of its unique position as the origin of the detected epidemic and its large influence on estimates of deaths averted stemming from its population size.

Role of the funding source

The sponsors of the study had no role in study design, data collection, data analysis, data interpretation, or writing of the report.

Results

Based on our model fit to officially reported COVID-19 deaths, we estimated that 18·1 million (95% credible interval [CrI] 17·4–19·7) deaths due to COVID-19 would have occurred without vaccinations worldwide during the first year of the COVID-19 vaccination programme (Dec 8, 2020, to Dec 8, 2021). Of these, we estimated that vaccination prevented 14·4 million (95% CrI 13·7–15·9) deaths due to COVID-19, representing a global reduction of 79% of deaths (14·4 million of 18·1 million) during the first year of COVID-19 vaccination (table 1). These estimates of vaccine impact do not account for the potential under-ascertainment of deaths related to COVID-19.
Table 1Estimated deaths averted in the first year of COVID-19 vaccinations worldwide based on fits to officially reported COVID-19 deaths


Total COVID-19 deathsVaccination coverage (%)Estimated deaths averted by vaccinations




TotalPer 10 000 peoplePer 10 000 vaccines
Worldwide5 469 000 (5 339 000–5 613 000)38·30%14 400 000 (13 650 000–15 900 000)22·81 (21·63–25·18)25·99 (24·64–28·69)
World Bank income group

High-income countries1 956 000 (1 892 000–2 032 000)68·80%6 353 000 (6 105 000–6 604 000)52·6 (50·54–54·67)36·67 (35·23–38·11)

Upper-middle-income countries2 287 000 (2 220 000–2 355 000)50·10%2 914 000 (2 785 000–3 047 000)25·6 (24·47–26·77)23·36 (22·33–24·43)

Lower-middle-income countries1 188 000 (1 099 000–1 302 000)29·80%5 083 000 (4 379 000–6 628 000)15·27 (13·16–19·91)20·39 (17·57–26·59)

Low-income countries36 520 (33 390–40 410)3·57%20 380 (17 680–23 870)0·3188 (0·2766–0·3733)2·965 (2·572–3·472)
WHO region

African region153 800 (145 100–164 700)5·48%97 190 (88 420–107 400)0·8677 (0·7894–0·9589)5·958 (5·420–6·584)

Region of the Americas2 492 000 (2 418 000–2 576 000)58·30%3 813 000 (3 624 000–3 987 000)37·46 (35·6–39·17)29·28 (27·83–30·62)

Eastern Mediterranean region318 700 (307 200–331 500)28·10%639 200 (581 600–707 700)8·746 (7·958–9·684)13·50 (12·28–14·95)

European region1 628 000 (1 589 000–1 673 000)56·50%4 334 000 (4 214 000–4 487 000)46·77 (45·48–48·42)39·52 (38·43–40·92)

South-East Asian region713 800 (635 900–807 000)35·40%3 913 000 (3 234 000–5 491 000)19·61 (16·21–27·52)21·63 (17·88–30·36)

Western Pacific region149 000 (120 100–234 400)62·40%1 574 000 (1 267 000–1 839 000)30·14 (24·26–35·21)22·58 (18·18–26·38)
Deaths averted are presented as medians with 95% credible intervals, with values also presented per 10 000 total population and per 10 000 vaccinations (first or second dose). Vaccination coverage is the proportion of the population with a full dose in the modelled countries by Dec 8, 2021. Total deaths are all modelled deaths in the presence of vaccinations when fitted to reported deaths from the start of the pandemic up to Dec 8, 2021.
Using our model fit to predicted and reported excess mortality (appendix p 23), we estimated that 31·4 million (95% CrI 30·6–32·1) deaths due to COVID-19 would have occurred without vaccinations during the first year of COVID-19 vaccination, with 19·8 million (95% CrI 19·1–20·4) deaths averted, corresponding to 63% (19·8 million of 31·4 million) of total deaths (table 2). The difference between vaccine impact estimates based on excess mortality and official deaths due to COVID-19 was greatest in low-income regions, with approximately ten times more deaths estimated to have been averted in low-income countries when relying on excess mortality estimates (appendix pp 13, 19).
Table 2Estimated deaths averted in the first year of COVID-19 vaccinations worldwide based on fits to excess mortality


Total excess deathsEstimated deaths averted by vaccinations



TotalPer 10 000 peoplePer 10 000 vaccines
Worldwide17 990 000 (17 610 000–18 530 000)19 810 000 (19 130 000–20 380 000)31·21 (30·14–32·1)35·68 (34·47–36·71)
World Bank income group

High-income countries2 503 000 (2 412 000–2 609 000)8 004 000 (7 644 000–8 438 000)66·18 (63·20–69·77)46·14 (44·07–48·64)

Upper-middle-income countries4 717 000 (4 611 000–4 827 000)4 230 000 (4 051 000–4 384 000)36·97 (35·40–38·31)33·71 (32·28–34·94)

Lower-middle-income countries9 688 000 (9 329 000–10 170 000)7 401 000 (6 841 000–7 655 000)22·23 (20·55–23·00)29·69 (27·44–30·71)

Low-income countries1 087 000 (1 068 000–1 106 000)180 300 (171 400–188 900)2·711 (2·576–2·840)26·23 (24·93–27·48)
WHO region

African region1 614 000 (1 580 000–1 652 000)466 400 (446 300–487 000)4·164 (3·985–4·348)28·59 (27·36–29·85)

Region of the Americas3 354 000 (3 260 000–3 456 000)4 469 000 (4 233 000–4 728 000)43·89 (41·57–46·43)34·31 (32·50–36·29)

Eastern Mediterranean region2 310 000 (2 248 000–2 376 000)992 800 (938 800–1 066 000)13·58 (12·85–14·59)20·97 (19·83–22·52)

European region3 448 000 (3 347 000–3 568 000)5 811 000 (5 551 000–6 187 000)62·30 (59·51–66·33)52·63 (50·28–56·04)

South-East Asian region6 741 000 (6 398 000–7 247 000)5 658 000 (5 114 000–5 858 000)27·99 (25·3–28·98)31·29 (28·28–32·39)

Western Pacific region518 700 (489 200–547 800)2 429 000 (2 266 000–2 617 000)46·31 (43·21–49·91)34·74 (32·42–37·44)
Deaths averted are presented as medians with 95% credible intervals, with values also presented per 10 000 total population and per 10 000 vaccinations (first or second dose). Total deaths are all modelled deaths in the presence of vaccinations when fitted to excess mortality from the start of the pandemic up to Dec 8, 2021.
Using our model fit to excess mortality, we estimated that most deaths averted were due to the high levels of individual-level direct protection conferred by vaccination, with 79% (15·5 million of 19·8 million) of deaths averted through direct protection (figure 1A). Vaccine impact was also conferred through reducing the levels of burden placed on health-care systems, reducing the number of days that health-care capacity would have been exceeded and therefore contributing to an overall lower fatality rate from infection (appendix p 20). Throughout 2021, vaccine impact changed over time and space. Vaccine impact was initially concentrated in lower-middle-income countries (figure 1B), resulting from the significant epidemic wave in India as the delta variant emerged. This was subsequently followed by vaccine impact being concentrated in high-income countries that were then either able to relax interventions due to high vaccination coverage (eg, the UK), or that did not implement further restrictions despite the spread of the more virulent delta variant in the second half of 2021.

Discussion

The high individual-level protection against severe disease and mortality due to COVID-19, as well as the population-level benefit afforded by mild protection against SARS-CoV-2 infection (before the emergence of the omicron [B.1.1.529] variant), conferred by vaccination, has fundamentally altered the course of the COVID-19 pandemic. Directly measuring the impact of vaccination programmes on COVID-19 mortality is not possible as the counterfactual (ie, without vaccinations) cannot be observed. Mathematical models are a valuable tool for quantifying the impact of vaccination campaigns on epidemic dynamics. We evaluated the impact of the first year of COVID-19 vaccination, revealing how vaccinations have more than halved the potential global death toll due to COVID-19, with an estimated 19·8 million deaths from COVID-19 averted as a result of vaccination, based on excess mortality estimates of the impact of the pandemic. These reductions were concentrated in high-income countries that relied on their vaccination programmes to relax interventions and allow SARS-CoV-2 transmission to increase as they moved into a new stage of the pandemic.
In low-income countries, particularly countries that did not reach the 20% targets set out by COVAX, vaccine impact was substantially lower, with vaccine impact estimated to have been almost doubled if the targets had been reached. If the 40% target, per country, from WHO had been met, we estimated a further increase in deaths averted, mainly focused in lower-middle-income countries and low-income countries. A limitation of our assessment of the COVAX and WHO targets is the timeframe of our analysis, as these targets were set to be reached by the end of 2021, whereas our modelling endpoint was Dec 8, 2021, to align with 1 year since the start of public vaccination. Hence, some countries might have moved closer to achieving the targets, or achieved them, by the end of the year. However, any recent vaccination drives would have had consequently negligible impact given the delay in developing protection and insufficient impact on COVID-19 dynamics.
Deriving estimates of vaccine impact is heavily dependent on the counterfactual scenario chosen. In our counterfactual, we assumed the same time-varying levels of SARS-CoV-2 transmission as estimated in our model fits. Consequently, the largest impact was observed in countries that delivered the most vaccinations to date and simultaneously relaxed interventions, allowing SARS-CoV-2 transmission to increase. However, several countries with slower vaccination roll-out as well as countries adopting a zero-COVID strategy maintained stronger interventions to suppress transmission and thus observed smaller impacts of their vaccination programmes as a result. As these countries start to reopen, we predict that vaccine impact estimates would increase in line with increasing levels of SARS-CoV-2 transmission.
Under-ascertainment of COVID-19 mortality is a known issue that has hindered our understanding of the pandemic. In this analysis, we consequently focused on fitting to all-cause excess mortality, which provides a more complete description of the pandemic. However, even when relying on model fits based on reported COVID-19 deaths, we estimated that more than 14 million deaths were averted by COVID-19 vaccination. The discrepancy between vaccine impact estimates based on excess mortality and COVID-19 deaths was concentrated in settings with lower death registration and certification. This substantial discrepancy underpins the crucial need for continued investment in civil registration and vital statistics to prevent biases in mortality reporting further minimising the perceived impact and necessity of vaccination in settings with lower reporting of deaths. In countries with more complete reporting systems, our estimates were broadly comparable to other endeavours focused on officially reported COVID-19 deaths and on understanding the direct impact of vaccination on people older than 60 years in Europe. We identified one study that estimated both the indirect and direct impact of vaccination, which again yielded estimates for vaccine impact in the USA that were similar to our impact estimates based on reported COVID-19 deaths.
In our effort to provide impact estimates globally, we introduced various assumptions into our model. We were hindered by the global disparities in SARS-CoV-2 genomic surveillance and the absence of detailed vaccination data for the majority of countries. Consequently, key model inputs had to be created from working assumptions on which vaccines were delivered, how they were delivered, and when new variants of concern spread worldwide. We also assumed that the relationship between age and IFR was the same for each country. These assumptions would have affected our estimates of deaths averted, with sensitivity analyses showing that higher overall IFRs will increase the number of deaths that could be averted by vaccination. Our impact estimates were also limited by the inherent uncertainty in model-based estimates of excess mortality. These estimates are likely to have underestimated or overestimated COVID-19 death tolls in many countries. Notably, our model fits were unable to recreate excess mortality death tolls in recent epidemic waves in Iraq and Sudan because of the depletion of the susceptible population. These discrepancies could have been due to multiple reasons, including overestimated excess mortality, proportions of excess mortality not due to COVID-19, higher infection fatality rates by age in low-income settings than those estimated from high-income countries, and lower vaccine effectiveness than assumed in our framework. Last, our impact estimates were dependent on the assumed degree of immune escape that each variant of concern exhibits. If immune escape was higher than we assumed, more of the population would have been susceptible to re-infection and consequently more deaths from COVID-19 could have been averted by vaccination.
More broadly, our estimates should be considered in light of the considerable uncertainty inherent in estimating vaccine impact. Uncertainty in the true death toll of the pandemic, the circulating variants of concern and their immunological phenotypes, and the vaccines themselves administered in many countries vastly complicate efforts to derive accurate estimates of the impact of COVID-19 vaccines. However, the results of this analysis still provide a comprehensive and thorough assessment of the impact of COVID-19 vaccination, revealing the substantial impact that vaccines have had and the millions of lives that are likely to have been saved during the first year of vaccination. Despite this, more lives could have been saved if vaccines had been distributed more rapidly to many parts of the world and if vaccine uptake could have been strengthened worldwide. Reaching vaccination coverage targets and improving vaccine coverage globally is dependent on multiple factors and not solely dependent on improving vaccine donations. Vaccine intellectual property needs to be shared more quickly in the future, with more open technology and knowledge transfer surrounding vaccine production and allocation. Vaccine distribution and delivery infrastructure also needs to be scaled up worldwide and misinformation combatted to improve vaccine demand. Improvements must be made in all these areas to reach current vaccine targets and help ensure that vaccines are more equitably distributed in the future.

  https://www.thelancet.com/journals/laninf/article/PIIS1473-3099(22)00320-6/fulltext

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